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tjparnell / biotoolbox

Tools for querying and analysis of genomic data
http://tjparnell.github.io/biotoolbox/
Artistic License 2.0
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Bug in change_chr_prefix.pl #1

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
When converting a sam/bam file with change_chr_prefix.pl only the header 
changes. This is because the change_name() result is not written to the file.

Line 378 in change_chr_prefix.pl should be:
$newline = join("\t", @data);

Best,

Pascal

Original issue reported on code.google.com by androidp...@gmail.com on 20 Nov 2011 at 4:20

GoogleCodeExporter commented 9 years ago 
Sorry, I just recently saw this bug. It is fixed in SVN revision 274. It will 
be released in package 1.6.2. Thanks!

Original comment by parnell...@gmail.com on 3 Feb 2012 at 7:04