bar2wig.pl usage correspond to bam2gff script

[GoogleCodeExporter]

What is the command line and arguments you are using?

>$ ./bar2wig.pl

What is the error generated, if there is one?

> This program will convert bar files to a wig file
>Usage:
>    /!\ bam2gff_bed.pl [--options...] <filename>
>      Options:
>      --in <filename>
>      --bed | --gff | --bigbed | --bb
>      --pe
>      --type <text>
>      --source <text>
>      --randstr
>      --out <filename> 
>      --bbapp </path/to/bedToBigBed>
>      --gz
>      --version
>      --help

What is the expected output? What do you see instead?

What version of the script are using? Use the --version option.

>$ ./bar2wig.pl --version
>
> This program will convert bar files to a wig file
> Biotoolbox script bar2wig.pl, version 1.14

Can you provide a small sample file that will reproduce the error? What
steps are
required to reproduce the error?

Please provide any additional information below.

Original issue reported on code.google.com by guillaume.tiberi on 4 Feb 2014 at 1:07

[GoogleCodeExporter]

Thanks for pointing this out. I have fixed the POD documentation and updated 
the online wiki.

You can grab the latest version through the online SVN. I also added a default 
java executable path in case it can't be found.

Original comment by parnell...@gmail.com on 4 Feb 2014 at 6:26

• Changed state: Fixed

[GoogleCodeExporter]

thx ! Java path was my second problem :)

Thx for your toolkit

Original comment by guillaume.tiberi on 4 Feb 2014 at 7:16