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tjunier / newick_utils

shell tools for processing phylogenetic trees
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Update configure.ac #14

Open matsen opened 8 years ago

matsen commented 8 years ago

When running autoreconf (GNU Autoconf) 2.69, I have to make these changes to get it to run.

I still get the following warnings, and the tests don't run right, but the binaries appear healthy.

libtoolize: putting auxiliary files in `.'.
libtoolize: copying file `./ltmain.sh'
libtoolize: Consider adding `AC_CONFIG_MACRO_DIR([m4])' to configure.ac and
libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree.
libtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
configure.ac:7: installing './config.guess'
configure.ac:7: installing './config.sub'
Makefile.am:32: warning: shell uname -s: non-POSIX variable name
Makefile.am:32: (probably a GNU make extension)
Makefile.am:32: warning: shell uname -m: non-POSIX variable name
Makefile.am:32: (probably a GNU make extension)

Thank you for the awesome code!

tjunier commented 8 years ago

Hi matsen; thanks for the patch - I am having problems compiling with it though. In particular, when do make distclean, I get 

...
make[1]: Leaving directory `/home/tjunier/projects/newick_utils/src'
Making distclean in tests
make[1]: Entering directory `/home/tjunier/projects/newick_utils/tests'
Makefile:999: ../src/.deps/canvas.Po: No such file or directory
Makefile:1000: ../src/.deps/concat.Po: No such file or directory
Makefile:1001: ../src/.deps/enode.Po: No such file or directory
...

Beats me. I don't recall seeing anything like this before. I'm also using autoconf 2.69.

Thomas

matsen commented 8 years ago

OK, well, no worries then. I know zero about autoconf.