Open josephwb opened 3 years ago
In trying to prune terminals, a weird result arises: 1) 10 terminals specified to be removed are not, and 2) a root edge length is in the final tree.
Using nw_prune compiled from the master branch. Recreate error:
nw_prune
nw_prune in.tre -f to_drop.txt > nw_out.tre
The original tree has 59 terminals, and 39 are specified to be pruned; so, 20 terminals should remain. However, the tree produced has 30 terminals.
Input tree, file with taxa to be pruned, actual output, expected output, and a list of terminals that we erroneously not removed are attached.
in.tre.txt list.txt nw_out.tre.txt expected.tre.txt unremoved.txt
In trying to prune terminals, a weird result arises: 1) 10 terminals specified to be removed are not, and 2) a root edge length is in the final tree.
Using
nw_prunecompiled from the master branch. Recreate error:The original tree has 59 terminals, and 39 are specified to be pruned; so, 20 terminals should remain. However, the tree produced has 30 terminals.
Input tree, file with taxa to be pruned, actual output, expected output, and a list of terminals that we erroneously not removed are attached.
in.tre.txt list.txt nw_out.tre.txt expected.tre.txt unremoved.txt