RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference transposable elements. Please read the wiki page (link below) for usage instructions. Also, there is a page on the wiki describing how the 1000 genomes CEU trio was carried out with the files and parameters used for the various steps.
The addition of the "Type=STRING," key in an ALT metadata line does not match format and breaks some parsers like pyVCF. You can see from the example line above that it was never supposed to be included and was probably a copy & paste error.
tk2
commented
8 years ago
The addition of the "Type=STRING," key in an ALT metadata line does not match format and breaks some parsers like pyVCF. You can see from the example line above that it was never supposed to be included and was probably a copy & paste error.