search

tkchafin / busco

MIT License
0 stars 0 forks source link

BBTools #13

Open tkchafin opened 1 day ago

tkchafin commented 1 day ago

Description of feature

Generates assembly statistics

tkchafin commented 1 day ago

New parameters needed: 

--contig_break n [default 10]
--scaffold_composition [boolean]
tkchafin commented 1 day ago

There doesn't look to be an existing module but we should be able to build off of one of the ones that do exist https://nf-co.re/modules/bbmap_filterbyname/ https://nf-co.re/modules/bbmap_bbduk/ https://nf-co.re/modules/bbmap_clumpify/ etc

tkchafin commented 1 day ago

Full BUSCO wrapper here: https://gitlab.com/ezlab/busco/-/blob/master/src/busco/busco_tools/bbtools.py?ref_type=heads