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BUSCO_GENERATEPLOT #22

Open tkchafin opened 1 month ago

tkchafin commented 1 month ago

Description of feature

Good news! Looks like there's an nf-core module for this already https://nf-co.re/modules/busco_generateplot/

tkchafin commented 1 month ago

Ok I have the HMMER module now outputting the input file you need for generate plot, you can access it like: 

...    // Run miniprot
    BUSCO_MINIPROT ( ch_fasta, ch_odb )
    ch_versions = ch_versions.mix ( BUSCO_MINIPROT.out.versions.first() )

    // Run HMMER
    BUSCO_MINIPROT_HMMER ( ch_fasta, ch_odb, BUSCO_MINIPROT.out.miniprot_output )
    ch_versions = ch_versions.mix ( BUSCO_MINIPROT.out.versions.first() )

    BUSCO_GENERATEPLOT( BUSCO_MINIPROT_HMMER.out.short_summary_txt )
    ...