tkdagdelen gnocchi_old issues

tkdagdelen / gnocchi_old

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cleanup

#56 tkdagdelen opened 7 years ago
0
User Thresholding

#55 nathanielparke closed 2 years ago
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Merging LinearWithIncremental into GnocchiRelease

#54 tkdagdelen closed 7 years ago
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Merging EvaluationTest and incLogAndProgTest

#53 tkdagdelen closed 7 years ago
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Evaluation thresholding

#52 nathanielparke closed 7 years ago
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Consolidated Changes

#51 Georgehe4 opened 7 years ago
1
Linear with incremental

#50 Georgehe4 closed 7 years ago
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Timer into evaluation

#49 nathanielparke closed 2 years ago
1
produces valid results

#48 sgoe1 closed 7 years ago
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Top N Validation

#47 p-yang opened 7 years ago
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Ensembler tests

#46 nathanielparke closed 7 years ago
1
Evaluation testing

#45 p-yang opened 7 years ago
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initial progressive validation work

#44 sgoe1 closed 7 years ago
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Additional Ensemblers

#43 nathanielparke closed 7 years ago
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scripts for puttings VCFs on HDFS, using referenceSNPs file

#42 sgoe1 closed 7 years ago
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Implement Monte Carlo Cross Validation

#41 Georgehe4 closed 7 years ago
0
Evaluation: Add flags to CLI to do k-fold cross-validation

#40 tkdagdelen opened 7 years ago
2
Evaluation: remove hard-coding of 9:1 split for training:test

#39 tkdagdelen opened 7 years ago
0
Evaluate Model Logic

#38 p-yang closed 7 years ago
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Evaluate Model Logic

#37 p-yang closed 7 years ago
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ADAM updates and save as Feature RDD

#36 Georgehe4 opened 7 years ago
1
Upgrade ADAM and prepare codebase for Spark 2.

#35 Georgehe4 closed 7 years ago
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Model evaluation functionality

#34 p-yang closed 7 years ago
0
incorrect handling of covariates

#33 sgoe1 closed 7 years ago
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Update log results to output as features

#32 Georgehe4 closed 7 years ago
1
Gnocchi Timing

#31 nathanielparke closed 7 years ago
1
Update Gnocchi Kryoregistrator

#30 Georgehe4 closed 7 years ago
1
Kryo Registrator Update

#29 Georgehe4 closed 8 years ago
0
Adam update

#28 Georgehe4 closed 7 years ago
0
Get the variantIds for the vcf and fill in

#27 tkdagdelen closed 7 years ago
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GnocchiSVMModel

#26 tkdagdelen closed 7 years ago
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GnocchiBinaryClassificationPMMLModelExport

#25 tkdagdelen closed 7 years ago
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GnocchiPMMLModelExportFactory

#24 tkdagdelen closed 7 years ago
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SVMSiteModelGeneration

#23 tkdagdelen closed 7 years ago
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GnocchiPMMLExportable

#22 tkdagdelen closed 7 years ago
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UpdateOrGenerateSVMwithSGD

#21 tkdagdelen closed 7 years ago
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SVMSitePhenoPrediction

#20 tkdagdelen closed 7 years ago
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SitePhenoPrediction

#19 tkdagdelen closed 7 years ago
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SVMSiteModelEvaluation

#18 tkdagdelen closed 7 years ago
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SiteModelEvaluation

#17 tkdagdelen closed 7 years ago
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SVMSiteCrossvalidation

#16 tkdagdelen closed 7 years ago
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SiteCrossvalidation

#15 tkdagdelen closed 7 years ago
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Tests for all

#14 tkdagdelen closed 7 years ago
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Registrator Update. Not completed

#13 Georgehe4 closed 8 years ago
0
GenotypeState needs to be modified to make missing genotypes more explicit

#12 tkdagdelen closed 7 years ago
0
Update parquet version

#11 Georgehe4 closed 8 years ago
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tests need to be modified to accommodate new file path requirements

#10 tkdagdelen closed 8 years ago
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Modify genotype path

#9 Georgehe4 closed 8 years ago
0
getting a FileNotFound error loading genotypes

#8 tkdagdelen closed 8 years ago
0
Need to add identity by state clustering

#7 tkdagdelen closed 7 years ago
0