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tkella47 / BioChem_DiffDock

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Ligplot+ blank after opening pdb files #7

Closed EeshaG2 closed 9 months ago

EeshaG2 commented 9 months ago

When I open the diffdocked.pdb or 2hyy.pdb on Ligplot+ nothing shows up. Am I supposed to change some parameters?

tkella47 commented 9 months ago

Can you please attach the the diffdock.pdb file here?

EeshaG2 commented 9 months ago

Can't attach .pdb file; emailed!

EeshaG2 commented 9 months ago

There is an error displayed on terminal: "java.io.IOException: Cannot run program "/Users/LigPlus/lib/exe_mac64/hbadd": error=86, Bad CPU type in executable"

tkella47 commented 9 months ago

This is caused by the Mac CPU using ARM instead of x86. Please open a terminal and run softwareupdate --install-rosetta

tkella47 commented 9 months ago

Please follow additional instructions here https://support.apple.com/en-us/HT211861

EeshaG2 commented 9 months ago

I got a bunch of security errors that I had to manually ignore in settings after I installed rosetta and tried to open the file again, but it works now! Thanks!

tkella47 commented 9 months ago

Glad this was resolved. LigPlot was developed a while ago, so I don't think the code was written with non-intel CPU's in mind. Thank you for bringing up this issue though, it is helpful.