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tkkarjal / magia

Automated brain PET analysis pipeline
https://doi.org/10.3389/fninf.2020.00003
MIT License
27 stars 6 forks source link

How to creat a reference region myself? #105

Closed colddie closed 7 months ago

colddie commented 7 months ago

How can I determine the ref_region.codes for the below function? Thank you!

function ref_region = magia_get_ref_region(tracer)

switch tracer case {'[11c]carfentanil' '[18f]dopa'} ref_region.label = 'OC'; ref_region.codes = [1011 2011]; case {'[11c]raclopride','[11c]madam','[18f]spa-rq','[11c]pib','[11c]pbr28','[18f]cft','[11c]flb','[18f]fdg','[18f]mk6240','[18f]av45','[18f]fbb','[18f]av1451'} ref_region.label = 'CER'; ref_region.codes = [8 47]; case {'[11c]pk11195' '[11c]tmsx'} ref_region.label = 'CAU'; ref_region.codes = [11 50]; case {'[18f]fmpep-d2' '[18f]sv2a'} ref_region.label = 'WM'; ref_region.codes = [2 41]; otherwise ref_region = ''; end

end

joupes commented 7 months ago

Hi, the codes are based on the freesurfer LUTe: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/AnatomicalROI/FreeSurferColorLUT