Open permia opened 1 year ago
Yes, please see this script: https://github.com/tkzeng/Pangolin/blob/main/scripts/custom_usage.py
You will need to obtain the sequence around the sites you are interested in predicting. For this use case, you can take the mean or maximum predictions over all tissues.
Hi, I am trying to predit the splice site of an RNA virus artificially expressed in host genome. Because the organism I studied is not model organism, there is no VCF file. The pangolin seem to must use a vcf file as the positional arguments. Could pangolin predict the splice site ab initio?