tkzeng / Pangolin

Pangolin is a deep-learning method for predicting splice site strengths.
GNU General Public License v3.0
61 stars 32 forks source link

Dependency Versions #14

Open MartGro opened 1 year ago

MartGro commented 1 year ago

Hi, I had some issues finding the right versions for pangolin to run. It worked by running:

conda install python=3.6
pip3 install torch==1.8.2 torchvision==0.9.2 torchaudio==0.8.2 --extra-index-url https://download.pytorch.org/whl/lts/1.8/cpu
conda install -c conda-forge pyvcf
pip install gffutils biopython pandas pyfastx

Here are the conda and pip dependencies: https://gist.github.com/MartGro/dfe979e79800a210faf0b85b43db62b0