Remove PyVCF dependency

tkzeng / Pangolin

Pangolin is a deep-learning method for predicting splice site strengths.

GNU General Public License v3.0

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Open kkchau opened 5 months ago

kkchau commented 5 months ago

Replace PyVCF, which has been abandoned for years now and can be buggy, with pysam, which offers stricter VCF parsing rules.

kkchau commented 3 months ago

@tkzeng would you be able to review? This should resolve some issues with installing the program