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tlemane / kmdiff

Differential k-mer analysis
GNU Affero General Public License v3.0
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Allow specifying sample IDs instead of numbers for kmdiff diff? #11

Open nikostr opened 5 months ago

nikostr commented 5 months ago

Thanks for this very nice tool! I'm interested in doing some permutations of my groups, in order to get an impression of what a baseline number significant hits is for my samples. If I'm understanding the documentation correctly, this would require re-counting with a different sample order, as sample order is being used to separate cases from controls. Would it be doable to allow specifying sample ID/indices rather than sample numbers for the kmdiff diff command?