tlemane / kmtricks

modular k-mer count matrix and Bloom filter construction for large read collections
GNU Affero General Public License v3.0
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Crashes when run-dir is not writeable #35

Open nikostr opened 4 months ago

nikostr commented 4 months ago

Hi! Thanks for this excellent tool! When aggregating or dumping on a run-dir that's read-only, I get the following error:

terminate called after throwing an instance of 'gatb::core::system::Exception'
[2024-04-27 20:35:12.548] [error] Killed after receive Aborted:SIGABRT(6) signal. Demangled backtrace dumped at ./kmtricks_backtrace.log. If the problem persists, please open an issue with the return of 'kmtricks infos' and the content of ./kmtricks_backtrace.log

It took me a while to figure this out, and I've replicated this behavior using the supplied test data. Putting this note here in case someone else runs into this issue.