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tleonardi / nanocompore

RNA modifications detection from Nanopore dRNA-Seq data
https://nanocompore.rna.rocks
GNU General Public License v3.0
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AttributeError: 'SampCompDB' object has no attribute 'results' #122

Closed tleonardi closed 4 years ago

tleonardi commented 4 years ago

This error is raised when the SampCompDB doesn't contain any significant site. It's expected that results doesn't exist in this case, but instead of throwing this uninformative error Nanocompore should print a message informing the user. Related to #121.

Traceback:

Traceback (most recent call last):
  File "/anaconda3/envs/nanocompore/bin/nanocompore", line 8, in <module>
    sys.exit(main())
  File "/anaconda3/envs/nanocompore/lib/python3.6/site-packages/nanocompore/__main__.py", line 139, in main
    args.func(args)
  File "/anaconda3/envs/nanocompore/lib/python3.6/site-packages/nanocompore/__main__.py", line 176, in sampcomp_main
    db.save_all(pvalue_thr=args.pvalue_thr)
  File "/anaconda3/envs/nanocompore/lib/python3.6/site-packages/nanocompore/SampCompDB.py", line 258, in save_all
    self.save_report(output_fn = outpath_prefix+"nanocompore_results.tsv")
  File "/anaconda3/envs/nanocompore/lib/python3.6/site-packages/nanocompore/SampCompDB.py", line 381, in save_report
    for record in self.results[self.results.ref_id == cur_id ].itertuples():
AttributeError: 'SampCompDB' object has no attribute 'results'