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tleonardi / nanocompore

RNA modifications detection from Nanopore dRNA-Seq data
https://nanocompore.rna.rocks
GNU General Public License v3.0
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Output file with list of selected transcripts #126

Closed a-slide closed 4 years ago

a-slide commented 4 years ago

Is your feature request related to a problem? Please describe. When using downsample_high_coverage' option there are currently no easy ways to track which reads have been selected (see https://github.com/tleonardi/nanocompore/issues/125)

Describe the solution you'd like The selected transcripts are stored in a Whitelist object during runtime. It would be easy enough to add an option to the class to output a simple text file with the list of all selected reads and the transcripts they are mapped on.

tleonardi commented 4 years ago

This will be solved once we merge #133