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tleonardi / nanocompore

RNA modifications detection from Nanopore dRNA-Seq data
https://nanocompore.rna.rocks
GNU General Public License v3.0
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Typo in header of shift_stats file #136

Closed tleonardi closed 4 years ago

tleonardi commented 4 years ago

Reported by @samir-watson in #132

Hi @tleonardi,

I have had a good look at what was happening with and it seems to a problem with pipes in the fasta headers that are being carried over from the fasta I used during SampComp so when I compare the SampCompDB database to the bed file there is no longer a match. I will try and redo the alignment with the pipes and extra IDs removed and see if that works.

On another note I found a tiny issue in SampCompDB.py line 421, it says "red_if" and I think its meand to be ref_id.

Cheers, Samir