If a ref_id is completely missing from one of the eventalign files it is not filtered out by the Whitelisting function as it should be.
This is due to the fact that the cond_lab and and sample_lab for the missing condition are not present in ref_dict, and therefore the assertion error is never raised.
If a ref_id is completely missing from one of the eventalign files it is not filtered out by the Whitelisting function as it should be.
This is due to the fact that the
cond_laband andsample_labfor the missing condition are not present inref_dict, and therefore the assertion error is never raised.https://github.com/tleonardi/nanocompore/blob/9f8effec65cbd5347f5ac7e1625164389adad866/nanocompore/Whitelist.py#L242-L246