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commented
4 years ago Hi @aman21392,
Looking at the log, I suppose there is a library conflict with things you have previously installed.
Would you be able to create a clean virtual environment with conda or virtualenv (as recommanded in the installation instructions) and try again ?
Hemantr05
I don't know what is the problem during downloading and after executing nanocompore command. I tried all way which you tell https://nanocompore.rna.rocks/installation/ . but when i doing help command i didn't get anything but error- ~$ nanocompore sampcomp --help Traceback (most recent call last): File "/home/aclab/.local/bin/nanocompore", line 7, in
from nanocompore.main import main
File "/home/aclab/.local/lib/python3.6/site-packages/nanocompore/main.py", line 15, in
from nanocompore.SampComp import SampComp
File "/home/aclab/.local/lib/python3.6/site-packages/nanocompore/SampComp.py", line 23, in
from nanocompore.TxComp import txCompare
File "/home/aclab/.local/lib/python3.6/site-packages/nanocompore/TxComp.py", line 12, in
import statsmodels.discrete.discrete_model as dm
File "/home/aclab/.local/lib/python3.6/site-packages/statsmodels/init.py", line 10, in
from statsmodels.tools.sm_exceptions import (ConvergenceWarning, CacheWriteWarning,
File "/home/aclab/.local/lib/python3.6/site-packages/statsmodels/tools/init.py", line 1, in
from .tools import add_constant, categorical
File "/home/aclab/.local/lib/python3.6/site-packages/statsmodels/tools/tools.py", line 9, in
import pandas as pd
File "/home/aclab/.local/lib/python3.6/site-packages/pandas/init.py", line 42, in
from pandas.core.api import *
File "/home/aclab/.local/lib/python3.6/site-packages/pandas/core/api.py", line 7, in
from pandas.core.arrays.integer import (
File "/home/aclab/.local/lib/python3.6/site-packages/pandas/core/arrays/init.py", line 2, in
from .base import (ExtensionArray, # noqa
File "/home/aclab/.local/lib/python3.6/site-packages/pandas/core/arrays/base.py", line 21, in
from pandas.core import ops
File "/home/aclab/.local/lib/python3.6/site-packages/pandas/core/ops/init.py", line 43, in
from pandas.core.ops.mask_ops import kleene_and, kleene_or, kleene_xor # noqa: F401
File "/home/aclab/.local/lib/python3.6/site-packages/pandas/core/ops/mask_ops.py", line 120, in
left: Union[bool, libmissing.NAType, np.ndarray],
AttributeError: module 'pandas._libs.missing' has no attribute 'NAType'
So please help me to get this problem to solve as soon as possible. I do all other steps which are required for this command. So i want please solve this issue first time i got stuck into not installing program. Thank you in advance