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tleonardi / nanocompore

RNA modifications detection from Nanopore dRNA-Seq data
https://nanocompore.rna.rocks
GNU General Public License v3.0
78 stars 12 forks source link

Regarding SampCompDB issues #143

Closed aman21392 closed 4 years ago

aman21392 commented 4 years ago

Please can you help me how to run SampCompDB through the python API. Beacause i am new in this field. I don't know how to execute python API. Please tell me if there is documents from where i learn how to run in pyhton API. I know its very basic questions but i don't know how to execute this command, and i am stuck in this step now. Thanks in advance

tleonardi commented 4 years ago

Hi @aman21392, we have a section in the documentation that explains how to use the API, have you had a look at it?

aman21392 commented 4 years ago

aclab@aclab-HP-Z4-G4-Workstation:~$ python Python 3.7.6 (default, Jan 8 2020, 19:59:22) [GCC 7.3.0] :: Anaconda, Inc. on linux Type "help", "copyright", "credits" or "license" for more information.

from nanocompore.SampCompDB import SampCompDB, jhelp Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'nanocompore' from nanocompore.SampCompDB import SampCompDB Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'nanocompore'

I don't import the packages as you suggested in documentation. so please help me how i import the packages in python