Transition to SQLite backend - use transcript-specific databases

tleonardi / nanocompore

RNA modifications detection from Nanopore dRNA-Seq data

https://nanocompore.rna.rocks

GNU General Public License v3.0

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Transition to SQLite backend - use transcript-specific databases #192

Open hendrikweisser opened 2 years ago

hendrikweisser commented 2 years ago

Supersedes https://github.com/tleonardi/nanocompore/pull/184.

This implementation uses one separate SQLite database for each transcript, plus one "master" database, to ease parallelisation. All databases are created during the "eventalign_collapse" step, then extended during the "sampcomp" step.