search

tleonardi / nanocompore

RNA modifications detection from Nanopore dRNA-Seq data
https://nanocompore.rna.rocks
GNU General Public License v3.0
79 stars 12 forks source link

Whitelist `max_mismatching_freq` and `max_missing_freq` #21

Closed tleonardi closed 6 years ago

tleonardi commented 6 years ago

Originally posted by @tleonardi in https://github.com/tleonardi/nanocompore/diffs/0

tleonardi commented 6 years ago

Oh yes, I see it now. It makes sense based on what you implemented in lines 178-179 of Whitelist.py. ;)

a-slide commented 6 years ago

Ah yes sorry I did not mention it in the pull request changelog. The idea was to have a simpler way to instantiate the class. Through SampComp you can only use the simple aggregated option. But if one need more granularity they can also run Whitelist separately and provide it to SampComp.