tljxyys / Perspective-Unet

[MICCAI2024] This repo holds the official code for work "Perspective+ Unet: Enhancing Segmentation with Bi-Path Fusion and Efficient Non-Local Attention for Superior Receptive Fields"
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No such file or directory: './data/ACDC/train_npz\\case0030_slice111.npz #1

Open tpwxtd opened 2 months ago

tpwxtd commented 2 months ago

When I was training my model, I encountered the error "No such file or directory: './data/ACDC/train_npz\case0030_slice111.npz'", and I haven't been able to find a solution. Can you help me resolve this issue?

屏幕截图 2024-07-08 205815
tljxyys commented 2 months ago

Please put the ACDC dataset in the corresponding path(you can download preprocessed data in the repo),and make sure the direction of the slash is correct. Best Regards

发自我的iPhone

------------------ Original ------------------ From: tpwxtd @.> Date: Mon,Jul 8,2024 8:59 PM To: tljxyys/Perspective-Unet @.> Cc: Subscribed @.***> Subject: Re: [tljxyys/Perspective-Unet] No such file or directory: './data/ACDC/train_npz\case0030_slice111.npz (Issue #1)

tpwxtd commented 2 months ago

Please put the ACDC dataset in the corresponding path(you can download preprocessed data in the repo),and make sure the direction of the slash is correct. Best Regards 发自我的iPhone 请将 ACDC 数据集放在对应的路径中(可以在 repo 中下载预处理的数据),并确保斜杠方向正确。 此致敬意

发自我的iPhone ------------------ Original ------------------ From: tpwxtd @.> Date: Mon,Jul 8,2024 8:59 PM To: tljxyys/Perspective-Unet @.> Cc: Subscribed @.***> Subject: Re: [tljxyys/Perspective-Unet] No such file or directory: './data/ACDC/train_npz\case0030_slice111.npz (Issue #1)

I have downloaded the dataset as required and placed it in the correct location, but the format of the ACDC dataset obtained from the provided link is different from the one described in the readme. After searching, I was unable to find an ACDC dataset in this format. Is this dataset processed manually? 1 2

tljxyys commented 2 months ago

You can download the preprocessed acdc here. Best Regards

发自我的iPhone

------------------ Original ------------------ From: tpwxtd @.> Date: Mon,Jul 8,2024 9:10 PM To: tljxyys/Perspective-Unet @.> Cc: Jintong Hu @.>, Comment @.> Subject: Re: [tljxyys/Perspective-Unet] No such file or directory: './data/ACDC/train_npz\case0030_slice111.npz (Issue #1)

Please put the ACDC dataset in the corresponding path(you can download preprocessed data in the repo),and make sure the direction of the slash is correct. Best Regards 发自我的iPhone 请将 ACDC 数据集放在对应的路径中(可以在 repo 中下载预处理的数据),并确保斜杠方向正确。 此致敬意

发自我的iPhone … ------------------ Original ------------------ From: tpwxtd @.> Date: Mon,Jul 8,2024 8:59 PM To: tljxyys/Perspective-Unet @.> Cc: Subscribed @.***> Subject: Re: [tljxyys/Perspective-Unet] No such file or directory: './data/ACDC/train_npz\case0030_slice111.npz (Issue #1)

I have downloaded the dataset as required and placed it in the correct location, but the format of the ACDC dataset obtained from the provided link is different from the one described in the readme. After searching, I was unable to find an ACDC dataset in this format. Is this dataset processed manually? 1.png (view on web) 2.png (view on web)

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.***>

tpwxtd commented 2 months ago

You can download the preprocessed acdc here. Best Regards 发自我的iPhone ------------------ Original ------------------ From: tpwxtd @.> Date: Mon,Jul 8,2024 9:10 PM To: tljxyys/Perspective-Unet @.> Cc: Jintong Hu @.>, Comment @.> Subject: Re: [tljxyys/Perspective-Unet] No such file or directory: './data/ACDC/train_npz\case0030_slice111.npz (Issue #1) Please put the ACDC dataset in the corresponding path(you can download preprocessed data in the repo),and make sure the direction of the slash is correct. Best Regards 发自我的iPhone 请将 ACDC 数据集放在对应的路径中(可以在 repo 中下载预处理的数据),并确保斜杠方向正确。 此致敬意 发自我的iPhone … ------------------ Original ------------------ From: tpwxtd @.> Date: Mon,Jul 8,2024 8:59 PM To: tljxyys/Perspective-Unet @.> Cc: Subscribed @.> Subject: Re: [tljxyys/Perspective-Unet] No such file or directory: './data/ACDC/train_npz\case0030_slice111.npz (Issue #1) I have downloaded the dataset as required and placed it in the correct location, but the format of the ACDC dataset obtained from the provided link is different from the one described in the readme. After searching, I was unable to find an ACDC dataset in this format. Is this dataset processed manually? 1.png (view on web) 2.png (view on web) — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.>

I'm sorry, but I cannot find the download link. I would be extremely grateful if you could provide it.

tljxyys commented 1 month ago

I posted a screenshot in my last reply but it seems to be blocked, you can download it using this link which is in the repo. https://drive.google.com/file/d/1s3efWoWd2xojorXyjzBXb9ECtIiwBt1P/view?usp=sharing image Best Regards

tpwxtd commented 1 month ago

I posted a screenshot in my last reply but it seems to be blocked, you can download it using this link which is in the repo. https://drive.google.com/file/d/1s3efWoWd2xojorXyjzBXb9ECtIiwBt1P/view?usp=sharing image Best Regards

Thank you very much for the link you provided and I have downloaded the dataset . I am truly grateful for your help.

apuomline commented 1 month ago

I am distressed because I don't have the ACDC dataset, and I am really grateful to the author for providing the link. This has been a great help to me who just started this task.

tljxyys commented 1 month ago

https://drive.google.com/file/d/1s3efWoWd2xojorXyjzBXb9ECtIiwBt1P/view?usp=sharing

wmxxxxxxxxx commented 3 weeks ago

hello,when I replicated the network, I replaced the original synapse dataset with another dataset, but the format of the new dataset strictly followed the format of the synapse dataset. I successfully trained the network, but encountered an issue with the number of channels during testing. Does this error mean there is a problem with my dataset? QQ图片20240810210526

tljxyys commented 3 weeks ago

@wmxxxxxxxxx The synapse dataset is set up to use single-frame images for training and time-series data for inference, please make sure that your dataset is the same as synapse for both training and inference, otherwise you may need to modify the code in the inference section a bit.