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tlnagy / Crispulator.jl

✂️ Pooled CRISPR screen optimization tool
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Current design crashes with latest stats packages #42

Closed tlnagy closed 8 years ago

tlnagy commented 8 years ago

The excision of Rmath from Base into Rmath.jl has kind of thrown a wrench into my current setup since it causes some precompilation issues: issue here -> https://github.com/JuliaLang/julia/issues/17845.

This is a priority for the slim version of crispulator.

tlnagy commented 8 years ago

This looks to be solved on 0.4 with 0e09c046e1d75c5c1e5ee755745897e6d3d68d83, but it's still broken on 0.5 due to breakage in Compose.jl, but that's out of my hands. I need to update the usage guide too to reflect these changes.

tlnagy commented 8 years ago

A lot of deprecation warnings and stuff fixed in ba4cb103157dcf191b99a25f5a2301ed206b2ead. I know that https://github.com/dcjones/Compose.jl/pull/211 is blocking.

tlnagy commented 8 years ago

compatibility with v0.5 is basically waiting for https://github.com/dcjones/Gadfly.jl/issues/866 to be finished. It's close now!

tlnagy commented 8 years ago

Most of the packages that Gadfly depends on have been fixed so tests now pass 🎉.

There's still a huge number of sketchy-looking warnings (mostly deprecations that be fixed pretty easily), but all the tests pass so I'm going to go ahead and close this.