I came across this error while running OrthoPhy.py up to the sixth step. How can I resolve it?
Reconcstruct species tree
multiprocessing.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "/root/miniconda3/lib/python3.9/multiprocessing/pool.py", line 125, in worker
result = (True, func(*args, **kwds))
File "/home/soft-images/OrthoPhy-main/bin/concatenate_tree.py", line 17, in multiple_gene_tree_reconstruction
instance.auto_exec()
File "/home/soft-images/OrthoPhy-main/bin/concatenate_tree.py", line 65, in auto_exec
self.trimal()
File "/home/soft-images/OrthoPhy-main/bin/concatenate_tree.py", line 59, in trimal
non_header_lines = int(subprocess.getoutput(cmd))
ValueError: invalid literal for int() with base 10: 'grep: result/06_species_tree/trimal/OG03281-1.2.trim: <9C><89><82><96><87><88><96><9B><95>'
"""
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/soft-images/OrthoPhy-main/OrthoPhy.py", line 571, in
ortholog_finder.inferring_ortholog()
File "/home/soft-images/OrthoPhy-main/OrthoPhy.py", line 273, in inferring_ortholog
self.reconstruct_concatenate_tree()
File "/home/soft-images/OrthoPhy-main/OrthoPhy.py", line 533, in reconstruct_concatenate_tree
reconstructor.astral()
File "/home/soft-images/OrthoPhy-main/bin/concatenatetree.py", line 119, in astral
for in pool.imap_unordered(multiple_gene_tree_reconstruction, instances):
File "/root/miniconda3/lib/python3.9/multiprocessing/pool.py", line 870, in next
raise value
ValueError: invalid literal for int() with base 10: 'grep: result/06_species_tree/trimal/OG03281-1.2.trim: <9C><89><82><96><87><88><96><9B><95>'
The analysis was aborted due to unexpected error (2023-09-19T21:24:28.404960)
I came across this error while running OrthoPhy.py up to the sixth step. How can I resolve it?