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tmuetze / Bioconductor_RCy3_the_new_RCytoscape

Update RCytoscape to work for Cytoscape 3.0 and higher using CyREST
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"No existing Cytoscape window named ..." #3

Closed pshannon-bioc closed 9 years ago

pshannon-bioc commented 9 years ago

Very minor. Whenever I issue

cw <- CytoscapeWindow("gbm mutations", g.mut, overwriteWindow=(TRUE or FALSE)

I always see:

No existing Cytoscape window named 'gbm mutations'

even though (hurray!) everything works fine.

tmuetze commented 9 years ago

This is because the CytoscapeWindow function calls the getWindowID function which prints that sentence. We added that sentence in the getWindowID function to inform the user - who is querying a certain window name - whether or not it exists. Solution: The getWindowID function now prints: "Cytoscape window named 'test' does not exist yet" and the CytoscapeWindow function adds: "New window named "test" was created in Cytoscape." with test replaced by the current window name.