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tobiasgf / lulu

r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
GNU Lesser General Public License v3.0
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Error in if (relative_cooccurence >= minimum_relative_cooccurence) { : missing value where TRUE/FALSE needed #7

Closed anslan closed 4 years ago

anslan commented 4 years ago

Dear Tobias,

lulu has worked fine for most of my data, but now I received an error, where adjusting the lulu parameters did not help. --> "Error in if (relative_cooccurence >= minimum_relative_cooccurence) { : missing value where TRUE/FALSE needed" Any idea how to fix this? image

Thanks, Sten

anslan commented 4 years ago

Oh, input OTU table simply contained OTUs with 0 seqs. Removing these OTUs resolved the issue.