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tolkit / fasta_windows

A Rust implementation of sliding window stats over fastas.
MIT License
12 stars 2 forks source link

Bigger range in kmer values #3

Open Euphrasiologist opened 3 years ago

Euphrasiologist commented 3 years ago

Is there potential to add larger kmer values as user input? Might require refactoring of the code which writes to output.

Euphrasiologist commented 3 years ago

I did have a play around with this; larger kmer values significantly increase the runtime. I suspect using a dedicated crate for this would produce better results (i.e. needletail).