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tomazc / iCount

iCount, protein-RNA interaction analytics
http://icount.biolab.si
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genomes: Add GENCODE as source of genome and annotation #161

Closed JureZmrzlikar closed 7 years ago

codecov-io commented 7 years ago

Codecov Report

Merging #161 into master will increase coverage by 0.13%. The diff coverage is 88.92%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #161      +/-   ##
==========================================
+ Coverage    85.2%   85.33%   +0.13%     
==========================================
  Files          51       52       +1     
  Lines        3663     3888     +225     
==========================================
+ Hits         3121     3318     +197     
- Misses        542      570      +28
Impacted Files Coverage Δ
iCount/cli.py 0% <ø> (ø) :arrow_up:
iCount/genomes/__init__.py 100% <100%> (ø) :arrow_up:
iCount/genomes/ensembl.py 96.89% <100%> (+4.34%) :arrow_up:
iCount/tests/test_cli.py 99.11% <100%> (+0.1%) :arrow_up:
iCount/genomes/gencode.py 68.42% <68.42%> (ø)
iCount/tests/test_genomes.py 95.95% <95.95%> (ø)

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tomazc commented 7 years ago

@JureZmrzlikar, update the CLI reference file, which is part of the documentation, by running:

cd docs
iCount man > source/ref_CLI.txt

and then add the source/ref_CLI.txt into the commit for this PR.

JureZmrzlikar commented 7 years ago

Isn't this meant to be done (only) during prepartion of release?

tomazc commented 7 years ago

The readthedocs documentation is (re)generated at each commit to the master branch... With this PR we are introducing new functionality that should be reflected in the documentation that is available online.

tomazc commented 7 years ago

@JureZmrzlikar, great job! Thanks for including gencode.