blastn and makeblasdb not found by SSTAR while they are both find in command line

[jupollet]

Hi, I follow the instruction to install and get the dependencies for SSTAR on Windows and on Linux. In both cases, blastn and makeblasdb were found in command line but SSTAR still say if makeblastdb and blastn are installed .. Can you help me please ?

thanks.

Justine

[tomdeman-bio]

Hi Justine,

Thanks for your message! When trying to run it on Linux, did you run these three commands on the command line (I also just updated this in the README doc)?

echo 'export BLASTN="blastn"' >> $HOME/.bash_profile echo 'export MAKEBLASTDB="makeblastdb"' >> $HOME/.bash_profile

source .bash_profile

The Windows version is only compatible with BLAST versions: 2.2.29+, 2.2.30+, 2.2.31+, 2.5.0+ and 2.6.0+ and need to be installed in

C:\Program Files\NCBI

Please let me know if this works for you

-Tom

Op vr 18 okt. 2019 om 11:16 schreef jupollet notifications@github.com:

Hi, I follow the instruction to install and get the dependencies for SSTAR on Windows and on Linux. In both cases, blastn and makeblasdb were found in command line but SSTAR still say if makeblastdb and blastn are installed .. Can you help me please ?

thanks.

Justine

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