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tomdoel / pulmonarytoolkit

Lung medical image analysis and visualisation software for Matlab.
GNU General Public License v3.0
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Changing coordinate system #29

Open Hoileong89 opened 6 years ago

Hoileong89 commented 6 years ago

How could I change the coordinate system from PTK coordinates to DICOM coordinates (based on your tutorial 2? Could I change it from the GUI?

Hoileong89 commented 6 years ago

I got the segmentation output and exported it in Nifti format from PTK. But when I overlaid it on the original image in ITKSnap, the segmentation output was not matched with the original image (the left lung was with the right lung segmentation). I was wondering if this is because of the coordinate system difference between PTK and ITKSnap. How could I possibly solve this?

mollymolla commented 4 years ago

I need to change the coordinate system in DICOM coordinates too. Did you manage to changing them?

How could I change the coordinate system from PTK coordinates to DICOM coordinates (based on your tutorial 2? Could I change it from the GUI?