tomdstanton / GetAlleles

Extract alleles from genome assemblies
GNU General Public License v3.0
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The table option returns error #2

Closed bananabenana closed 5 months ago

bananabenana commented 5 months ago

Issue

I get an error when I try to use the --table command: GetAlleles: error: argument -t/--table: invalid load value: '11'

# Testing with --table
python GetAlleles/get_alleles.py screen_genes/16S_ribosomal_RNA.fasta assemblies/*.fasta \
--all 16S \
--min-id 90 \
--min-cov 90 \
--table 11 \
-o 16S_alleles_test.tsv

# Testing with -t
python GetAlleles/get_alleles.py screen_genes/16S_ribosomal_RNA.fasta assemblies/*.fasta \
--all 16S \
--min-id 90 \
--min-cov 90 \
-t 11 \
-o 16S_alleles_test.tsv

This also happens if I try to use other numbers too. Thanks