tommyau bamclipper issues - Githubissues

tommyau / bamclipper

Remove primer sequence from BAM alignments by soft-clipping

MIT License

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issues

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Suggest adding parameter -o for output path

#17 JuleBrenningmeyer opened 1 year ago
1
Negative strand genes

#16 ceromova opened 1 year ago
0
clipping is not working if deletions follows the primer site

#15 MarieLataretu opened 1 year ago
0
3' end clipping not working

#14 donutbrew opened 4 years ago
1
Overlapping amplicons

#13 aledj2 opened 4 years ago
1
Add output option

#12 Char-Al opened 4 years ago
3
-u and -d clarification

#11 aledj2 closed 6 years ago
2
Sam Flag

#10 OldManTae opened 6 years ago
0
Picard Compatibility

#9 OldManTae opened 6 years ago
1
Output metrics

#8 OldManTae opened 7 years ago
2
ValidateSamFile detects errors in BAM files after soft-clipping primers with BamClipper

#7 garrulus-glandarius opened 7 years ago
2
ERROR: BEDPE file (-p) is not defined

#6 garrulus-glandarius closed 7 years ago
6
Primer Extension Methods

#5 crutching closed 7 years ago
4
Marked and unmarked bases when clipping against the primer sequences

#4 PromitaBose opened 7 years ago
1
soft clipping primers from BAM files using sequences

#3 PromitaBose closed 7 years ago
4
chr vs no chr

#2 rjsicko closed 7 years ago
2
manifest to bedpe script

#1 rjsicko closed 7 years ago
3