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tommyau
/
bamclipper
Remove primer sequence from BAM alignments by soft-clipping
MIT License
31
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Suggest adding parameter -o for output path
#17
JuleBrenningmeyer
opened
9 months ago
0
Negative strand genes
#16
ceromova
opened
1 year ago
0
clipping is not working if deletions follows the primer site
#15
MarieLataretu
opened
1 year ago
0
3' end clipping not working
#14
donutbrew
opened
4 years ago
1
Overlapping amplicons
#13
aledj2
opened
4 years ago
1
Add output option
#12
Char-Al
opened
4 years ago
3
-u and -d clarification
#11
aledj2
closed
5 years ago
2
Sam Flag
#10
OldManTae
opened
6 years ago
0
Picard Compatibility
#9
OldManTae
opened
6 years ago
1
Output metrics
#8
OldManTae
opened
6 years ago
2
ValidateSamFile detects errors in BAM files after soft-clipping primers with BamClipper
#7
garrulus-glandarius
opened
6 years ago
2
ERROR: BEDPE file (-p) is not defined
#6
garrulus-glandarius
closed
6 years ago
6
Primer Extension Methods
#5
crutching
closed
6 years ago
4
Marked and unmarked bases when clipping against the primer sequences
#4
PromitaBose
opened
7 years ago
1
soft clipping primers from BAM files using sequences
#3
PromitaBose
closed
7 years ago
4
chr vs no chr
#2
rjsicko
closed
7 years ago
2
manifest to bedpe script
#1
rjsicko
closed
7 years ago
3