Open tompollard opened 3 hours ago
We need to work out how to transform MIMIC-IV to the OMOP procedure_occurence table. We could base our initial transform on the approach at: https://github.com/OHDSI/MIMIC/blob/master/etl/etl/cdm_procedure_occurrence.sql
procedure_occurence
There is demo source data (from MIMIC-IV v2.2 demo) at: https://github.com/tompollard/omopetl/tree/main/omopetl/templates/demo/data/source
We need to work out how to transform MIMIC-IV to the OMOP
procedure_occurencetable. We could base our initial transform on the approach at: https://github.com/OHDSI/MIMIC/blob/master/etl/etl/cdm_procedure_occurrence.sqlThere is demo source data (from MIMIC-IV v2.2 demo) at: https://github.com/tompollard/omopetl/tree/main/omopetl/templates/demo/data/source