Error when trying to update

[Mukei]

Hi, I get the below error when trying to update the package with devtools::install_github('tomwenseleers/export',local = F).

* installing *source* package ‘export’ ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import ‘ReporteRs::renderFlexTable’ by ‘rtable::renderFlexTable’ when loading ‘export’
Error : .onLoad failed in loadNamespace() for 'rgl', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/Users/user.name/Library/R/3.3/library/rgl/libs/rgl.so':
  dlopen(/Users/user.name/Library/R/3.3/library/rgl/libs/rgl.so, 6): Library not loaded: /opt/X11/lib/libGLU.1.dylib
  Referenced from: /Users/user.name/Library/R/3.3/library/rgl/libs/rgl.so
  Reason: image not found
ERROR: lazy loading failed for package ‘export’
* removing ‘/Users/user.name/Library/R/3.3/library/export’
* restoring previous ‘/Users/user.name/Library/R/3.3/library/export’
Error: Command failed (1)

[tomwenseleers]

Hi Thomas,

I am also attaching the .ZIP file of the package - does that install OK by any chance: https://www.dropbox.com/s/c905akeocvc0l1y/export_0.2.1.zip?dl=1

Sounds like some problem that you have getting the rgl package installed, not sure where that issue is coming from...

cheers,

Tom

---

From: Thomas Telandro notifications@github.com Sent: 02 December 2016 01:07 To: tomwenseleers/export Subject: [tomwenseleers/export] Error when trying to update (#6)

Hi, I get the below error when trying to update the package with devtools::install_github('tomwenseleers/export',local = F).

`* installing source package ‘export’ ... R data inst preparing package for lazy loading Warning: replacing previous import ‘ReporteRs::renderFlexTable’ by ‘rtable::renderFlexTable’ when loading ‘export’ Error : .onLoad failed in loadNamespace() for 'rgl', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/Users/user.name/Library/R/3.3/library/rgl/libs/rgl.so': dlopen(/Users/user.name/Library/R/3.3/library/rgl/libs/rgl.so, 6): Library not loaded: /opt/X11/lib/libGLU.1.dylib Referenced from: /Users/user.name/Library/R/3.3/library/rgl/libs/rgl.so Reason: image not found ERROR: lazy loading failed for package ‘export’

• removing ‘/Users/user.name/Library/R/3.3/library/export’
• restoring previous ‘/Users/user.name/Library/R/3.3/library/export’ Error: Command failed (1)`

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[Mukei]

Hi Tom,

Thank you. I could install the package without trouble, but now I am getting various error

graph2ppt(file = paste0(today()," - filename.pptx"), aspectr = 1.7, fontname_sans = "Segoe UI", append = TRUE)
Error: lazy-load database '/Users/user.name/Library/R/3.3/library/export/R/export.rdb' is corrupt
In addition: Warning message:
internal error -3 in R_decompress1 

graph2ppt(file = paste0(today()," - filename.pptx"), aspectr = 1.7, append = TRUE)
Error: lazy-load database '/Users/user.name/Library/R/3.3/library/export/R/export.rdb' is corrupt
In addition: Warning messages:
1: restarting interrupted promise evaluation 
2: internal error -3 in R_decompress1 

Also, while I notice the issue with rgl, I have no issue with the below: install.packages("rgl")

Thanks, Thomas

[Mukei]

After restarting my session and reloading the package I got the following error

Error : .onLoad failed in loadNamespace() for 'rgl', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/Users/user.name/Library/R/3.3/library/rgl/libs/rgl.so':
  dlopen(/Users/user.name/Library/R/3.3/library/rgl/libs/rgl.so, 6): Library not loaded: /opt/X11/lib/libGLU.1.dylib
  Referenced from: /Users/user.name/Library/R/3.3/library/rgl/libs/rgl.so
  Reason: image not found
In addition: Warning message:
replacing previous import ‘ReporteRs::renderFlexTable’ by ‘rtable::renderFlexTable’ when loading ‘export’ 
Error: package or namespace load failed for ‘export’

[tomwenseleers]

Hi Thomas,

It sounds like you are having problems with the rgl library...

Can you install the rgl library OK, and does library(rgl) give you any errors then?

cheers,

Tom

---

From: Thomas Telandro notifications@github.com Sent: 03 December 2016 15:49 To: tomwenseleers/export Cc: Tom Wenseleers; Comment Subject: Re: [tomwenseleers/export] Error when trying to update (#6)

After restarting my session and reloading the package I got the following error

Error : .onLoad failed in loadNamespace() for 'rgl', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/Users/thomas.telandro/Library/R/3.3/library/rgl/libs/rgl.so': dlopen(/Users/thomas.telandro/Library/R/3.3/library/rgl/libs/rgl.so, 6): Library not loaded: /opt/X11/lib/libGLU.1.dylib Referenced from: /Users/thomas.telandro/Library/R/3.3/library/rgl/libs/rgl.so Reason: image not found In addition: Warning message: replacing previous import 'ReporteRs::renderFlexTable' by 'rtable::renderFlexTable' when loading 'export' Error: package or namespace load failed for 'export'

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[Mukei]

Hi Tom,

I can install the library without trouble but when I try loading it I get:

Error : .onLoad failed in loadNamespace() for 'rgl', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/Users/user.nameLibrary/R/3.3/library/rgl/libs/rgl.so':
  dlopen(/Users/user.nameLibrary/R/3.3/library/rgl/libs/rgl.so, 6): Library not loaded: /opt/X11/lib/libGLU.1.dylib
  Referenced from: /Users/user.name/Library/R/3.3/library/rgl/libs/rgl.so
  Reason: image not found
Error: package or namespace load failed for ‘rgl’

I found I might just have to install Quartz: http://stackoverflow.com/questions/33634871/installing-rgl-package-in-r-mac-osx-el-captian-fixed

I am trying the above and will update after that.

[tomwenseleers]

Hi Thomas,

This sounds more like something that should be addressed by the rgl package maintainers...

Are you working under Linux?

If so here is a thread that might be helpful:

https://github.com/bioconda/bioconda-recipes/issues/489

cheers,

Tom

From: Thomas Telandro notifications@github.com

Sent: 04 December 2016 13:23 To: tomwenseleers/export Cc: Tom Wenseleers; Comment Subject: Re: [tomwenseleers/export] Error when trying to update (#6)

Hi Tom,

I can install the library without trouble but when I try loading it I get:

Error : .onLoad failed in loadNamespace() for 'rgl', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/Users/user.nameLibrary/R/3.3/library/rgl/libs/rgl.so': dlopen(/Users/user.nameLibrary/R/3.3/library/rgl/libs/rgl.so, 6): Library not loaded: /opt/X11/lib/libGLU.1.dylib Referenced from: /Users/user.name/Library/R/3.3/library/rgl/libs/rgl.so Reason: image not found Error: package or namespace load failed for 'rgl'

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[Mukei]

Tom, I am on OSX 10.11.6. After install Quartz, all is working back again. Only new (small) issue is that the font I was using is not found anymore (Segoe UI).

Thank you so much for your time and support! Thomas

[tomwenseleers]

Hi Thomas,

I removed the argument font from my functions, but I think that specifying the font using

options("ReporteRs-default-font" = "Segoe UI")

or passing your font as option

fontname_sans = "Segoe UI" in graph2ppt may still work - have a try!

see ?addPlot in ReporteRs

(I believe at least that these options get passed on using the ... in my functions)

cheers,

Tom

---

From: Thomas Telandro notifications@github.com Sent: 04 December 2016 15:57 To: tomwenseleers/export Cc: Tom Wenseleers; Comment Subject: Re: [tomwenseleers/export] Error when trying to update (#6)

Tom, I am on OSX 10.11.6. After install Quartz, all is working back again. Only new (small) issue is that the font I was using is not found anymore (Segoe UI).

Thank you so much for your time and support! Thomas

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