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tongshiyuan / mvPPT

A comprehensive prediction tool, mvPPT (Pathogenicity Prediction Tool for missense variants).
MIT License
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annodb data can't be decompressed #2

Open ReWeda opened 10 months ago

ReWeda commented 10 months ago

Hi! I'm trying to implement mvPPT to annotate and prioritize some variants. I took advantage of the pre-computed scores you provide but I'd like to fully run your tool too.

I'm struggling rebuilding the database/annotation file required by both annovar and mvPPT. Demo files you provide in this repo can't be decompressed (gnomad_AAF.txt excluded). They're not in a gzip format apparently. I already downloaded raw files from the various database but I can't figure out the right format for the different files, especially for ones directly imported by mvPPT in the sequence annotation and prediction phases.

Can you please provide a description of mandatory columns per file? Even an head command will work too.

Thanks in advance, Best, Davide

tongshiyuan commented 10 months ago

Hi, Thank you for your attention. I'm sorry my project has caused your trouble. I will take the time to rebuild it in the near future.