tonydisera gene.iobio issues

tonydisera / gene.iobio

An iobio app for examining gene variants

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issues

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Clear cache not clearing loaded variants

#795 tonydisera closed 5 years ago
0
Clinvar pathogenic variant not showing up in eutils for variant in clinvar vcf

#794 tonydisera closed 5 years ago
0
Adding DECIPHER gene page links

#793 mvelinder opened 6 years ago
1
Min number or min percent of alt counts

#792 mvelinder opened 6 years ago
3
Add DGIdb data to gene information

#791 mvelinder opened 6 years ago
7
Add UniProt, HumanMine and ProteinAtlas gene resource links

#790 mvelinder opened 6 years ago
3
Prompt user if relatedness in trio is suspicious

#789 mvelinder opened 6 years ago
0
Collapse introns

#788 AlistairNWard opened 6 years ago
1
Exon colouring on low coverage

#787 AlistairNWard opened 6 years ago
1
Exon colouring on low coverage

#786 AlistairNWard opened 6 years ago
0
SCN8A missing likely pathogenic ClinVar annotaiton

#785 tonydisera opened 6 years ago
4
Remove BRCA1 as startup gene

#784 AlistairNWard opened 6 years ago
1
When user entered affected sib, then uaffected sib row shows up in Ranked Variants Table

#783 tonydisera opened 6 years ago
0
Link out UCSC browser, show conservation, maybe phenotype tracks, reference sequence [gene]

#782 tonydisera opened 6 years ago
0
Remove VCF filter status field

#781 tonydisera opened 6 years ago
0
Automatically clear out existing genes when importing bookmarks, don’t ask

#780 tonydisera opened 6 years ago
0
Zooming not obvious

#779 tonydisera opened 6 years ago
0
Only report back top n number of genes from phenolyzer (250?) -- some terms give back thousands

#778 tonydisera opened 6 years ago
0
OMIM clinical synopsis information (affected systems and their phenotypes) Compound het filters

#777 tonydisera opened 6 years ago
0
Would like to see OMIM entry for gene (important to show mode of inheritance for associated disorders)

#776 tonydisera opened 6 years ago
0
Make it clear when a gene is on X or Y

#775 AlistairNWard opened 6 years ago
0
Clinvar variants track reverts back to counts when switching between genes

#774 mvelinder opened 6 years ago
2
Find rare variants, bookmarks don't load

#773 tonydisera opened 6 years ago
0
Show legend by default, also simplify legend for AF

#772 tonydisera opened 6 years ago
0
Get rid of 'Yes, clear cache' prompt when gene launches

#771 tonydisera opened 6 years ago
0
EBF3 gene linking out to MAPRE3 on genecards

#770 mvelinder opened 6 years ago
0
Production IOBIO vt and bcftools crashing (Gencove AWS signed URLS?)

#769 tonydisera closed 6 years ago
1
Simplify loading display next to page controls

#768 tonydisera opened 6 years ago
0
Improve performance by increasing batch size for 'Analyze all' and increasing number of worker nodes

#767 tonydisera opened 6 years ago
0
Improve performance when getting clinvar annotations for sample's variants

#766 tonydisera opened 6 years ago
1
Hover over clinvar variant – show amino acid position and aa change

#765 tonydisera opened 6 years ago
0
Link out UCSC browser, show conservation, maybe phenotype tracks, reference sequence

#764 tonydisera opened 6 years ago
0
Zoom into region stays after zooming and then changing to another gene

#763 tonydisera opened 6 years ago
0
X chromosome not flagging as X linked recessive

#762 tonydisera opened 6 years ago
0
Chrome windows bug – filtering (toggling on/off inheritance causes browser crash)

#761 tonydisera opened 6 years ago
0
Variant card shows ‘NULL’ for proband

#760 tonydisera opened 6 years ago
0
Remove VCF filter status field in variant card

#759 tonydisera opened 6 years ago
0
Only report back top n number of genes from phenolyzer (250?) -- some terms give back thousands

#758 tonydisera opened 6 years ago
0
Show OMIM clinical synopsis information (affected systems and their phenotypes)

#757 tonydisera opened 6 years ago
0
Show OMIM entry for gene (important to show mode of inheritance for associated disorders)

#756 tonydisera opened 6 years ago
0
Automatically clear out existing genes when importing bookmarks, don’t ask

#755 tonydisera opened 6 years ago
0
Endpoints

#754 tonydisera opened 6 years ago
0
Show warning message when no results returned from Phenolyzer

#753 tonydisera closed 6 years ago
0
'Add or replace genes' prompts keeps reappearing on Phenolyzer search after user presses 'Keep genes' and phenolyzer is still pending.

#752 tonydisera closed 6 years ago
0
Include sibling symbols in legend

#751 AlistairNWard opened 6 years ago
0
Phenolyzer - can't copy/paste separate terms or use copy/paste for typeahead

#750 tonydisera opened 6 years ago
0
Progress bars

#749 AlistairNWard opened 6 years ago
0
Analyze 277 genes for EIEE case for manuscript resubmission

#748 tonydisera closed 6 years ago
0
Analyze with results from phenolyzer, not change phenotype term, add genes and analyze all. Gene now loses badge

#747 tonydisera opened 6 years ago
0
After selecting radio button 'Variants' in the Clinvar Variant card, switching genes resets to ClinVar 'counts.

#746 tonydisera opened 6 years ago
1