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tonydisera / gene.iobio

An iobio app for examining gene variants
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Strand info #133

Open AlistairNWard opened 8 years ago

AlistairNWard commented 8 years ago

Display strand information for each variant (for both ref and alt alleles).

tonydisera commented 8 years ago

For GATK, use SAC field: https://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_gatk_tools_walkers_annotator_StrandAlleleCountsBySample.php

For Freebayes, use strand bias counts (SRF, SRR, SAF, SAR): https://www.biostars.org/p/85400/