Validating ProForma - Githubissues

topdownproteomics / sdk

Software solution for common top-down proteomics tasks

http://www.topdownproteomics.org/

MIT License

9 stars 4 forks source link

Open acesnik opened 6 years ago

acesnik commented 6 years ago

Check for legal syntax
Check that the syntax is logically correct (e.g. prefix tag should not be used with other keys in the sequence)

acesnik commented 6 years ago

It looks like this is actually pretty polished up to the parsing of ProteoformGroup objects. What's next?

We're not validating the modification sites... should we check to see that the amino acid target makes sense for the modification?
Should we create a ProteoformFactory, that can generate possible proteoforms given a proteoform group? This would allow us to consider the ambiguity descriptors.