Add parsing and writing for ambiguity descriptors

topdownproteomics / sdk

Software solution for common top-down proteomics tasks

http://www.topdownproteomics.org/

MIT License

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Add parsing and writing for ambiguity descriptors #57

Closed acesnik closed 6 years ago

acesnik commented 6 years ago

Feedback is welcome on the data structure I chose. I'm not sure inheritance for the descriptor will be the best way to organize this for writing and validation, but it seemed the least invasive for the parser on this first pass.

acesnik commented 6 years ago

Addresses https://github.com/topdownproteomics/sdk/issues/17

acesnik commented 6 years ago

Should be ready for another look, @rfellers. I changed the unlocalized modification notation to [Phospho]?PROTEOFORM, and I left range ambiguity notation the same for now.

acesnik commented 6 years ago

Oh, and to answer whether we're planning to use it, yes we are!