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Linkage failure on libluaT.so #1168

Closed v1993 closed 5 years ago

v1993 commented 5 years ago 
v@v-xubuntu:~/compile/luaffifb$ sudo luarocks --from=https://raw.githubusercontent.com/torch/rocks/master/ install torch
Warning: The directory '/home/v/.cache/luarocks' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing /usr/lib/luarocks/rocks-5.2/luarocks/3.0.3-1/bin/luarocks with sudo, you may want sudo's -H flag.
Installing https://raw.githubusercontent.com/torch/rocks/master/torch-scm-1.rockspec

Клонирование в «torch7»…
remote: Enumerating objects: 181, done.
remote: Counting objects: 100% (181/181), done.
remote: Compressing objects: 100% (174/174), done.
remote: Total 181 (delta 8), reused 57 (delta 5), pack-reused 0
Получение объектов: 100% (181/181), 335.51 KiB | 789.00 KiB/s, готово.
Определение изменений: 100% (8/8), готово.
cmake -E make_directory build && cd build && cmake .. -DCMAKE_BUILD_TYPE=Release -DLUA=/usr/bin/lua5.2 -DLUALIB=liblua5.2.a -DLUA_BINDIR="/usr/bin" -DLUA_INCDIR="/usr/include/lua5.2" -DLUA_LIBDIR="/usr/lib/x86_64-linux-gnu" -DLUADIR="/usr/lib/luarocks/rocks-5.2/torch/scm-1/lua" -DLIBDIR="/usr/lib/luarocks/rocks-5.2/torch/scm-1/lib" -DCMAKE_INSTALL_PREFIX="/usr/lib/luarocks/rocks-5.2/torch/scm-1" && make

-- The C compiler identification is GNU 7.3.0
-- The CXX compiler identification is GNU 7.3.0
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Compiling with OpenMP support
CMake Deprecation Warning at lib/TH/CMakeLists.txt:5 (CMAKE_POLICY):
  The OLD behavior for policy CMP0026 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.

-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Compiling with OpenMP support
-- Could not find hardware support for NEON on this machine.
-- No OMAP3 processor on this machine.
-- No OMAP4 processor on this machine.
-- Looking for cpuid.h
-- Looking for cpuid.h - found
-- Performing Test HAVE_GCC_GET_CPUID
-- Performing Test HAVE_GCC_GET_CPUID - Success
-- Performing Test NO_GCC_EBX_FPIC_BUG
-- Performing Test NO_GCC_EBX_FPIC_BUG - Success
-- Performing Test C_HAS_SSE1_1
-- Performing Test C_HAS_SSE1_1 - Success
-- Performing Test C_HAS_SSE2_1
-- Performing Test C_HAS_SSE2_1 - Success
-- Performing Test C_HAS_SSE3_1
-- Performing Test C_HAS_SSE3_1 - Failed
-- Performing Test C_HAS_SSE3_2
-- Performing Test C_HAS_SSE3_2 - Success
-- Performing Test C_HAS_SSE4_1_1
-- Performing Test C_HAS_SSE4_1_1 - Failed
-- Performing Test C_HAS_SSE4_1_2
-- Performing Test C_HAS_SSE4_1_2 - Success
-- Performing Test C_HAS_SSE4_2_1
-- Performing Test C_HAS_SSE4_2_1 - Failed
-- Performing Test C_HAS_SSE4_2_2
-- Performing Test C_HAS_SSE4_2_2 - Success
-- Performing Test C_HAS_AVX_1
-- Performing Test C_HAS_AVX_1 - Failed
-- Performing Test C_HAS_AVX_2
-- Performing Test C_HAS_AVX_2 - Success
-- Performing Test C_HAS_AVX2_1
-- Performing Test C_HAS_AVX2_1 - Failed
-- Performing Test C_HAS_AVX2_2
-- Performing Test C_HAS_AVX2_2 - Success
-- Performing Test CXX_HAS_SSE1_1
-- Performing Test CXX_HAS_SSE1_1 - Success
-- Performing Test CXX_HAS_SSE2_1
-- Performing Test CXX_HAS_SSE2_1 - Success
-- Performing Test CXX_HAS_SSE3_1
-- Performing Test CXX_HAS_SSE3_1 - Failed
-- Performing Test CXX_HAS_SSE3_2
-- Performing Test CXX_HAS_SSE3_2 - Success
-- Performing Test CXX_HAS_SSE4_1_1
-- Performing Test CXX_HAS_SSE4_1_1 - Failed
-- Performing Test CXX_HAS_SSE4_1_2
-- Performing Test CXX_HAS_SSE4_1_2 - Success
-- Performing Test CXX_HAS_SSE4_2_1
-- Performing Test CXX_HAS_SSE4_2_1 - Failed
-- Performing Test CXX_HAS_SSE4_2_2
-- Performing Test CXX_HAS_SSE4_2_2 - Success
-- Performing Test CXX_HAS_AVX_1
-- Performing Test CXX_HAS_AVX_1 - Failed
-- Performing Test CXX_HAS_AVX_2
-- Performing Test CXX_HAS_AVX_2 - Success
-- Performing Test CXX_HAS_AVX2_1
-- Performing Test CXX_HAS_AVX2_1 - Failed
-- Performing Test CXX_HAS_AVX2_2
-- Performing Test CXX_HAS_AVX2_2 - Success
-- SSE2 Found
-- SSE3 Found
-- AVX Found
-- AVX2 Found
-- Performing Test HAS_C11_ATOMICS
-- Performing Test HAS_C11_ATOMICS - Success
-- TH_SO_VERSION: 0
-- Atomics: using C11 intrinsics
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of void*
-- Check size of void* - done
-- Checking for [mkl_gf_lp64 - mkl_gnu_thread - mkl_core - gomp - pthread - m - dl]
--   Library mkl_gf_lp64: not found
-- Checking for [mkl_gf_lp64 - mkl_intel_thread - mkl_core - gomp - pthread - m - dl]
--   Library mkl_gf_lp64: not found
-- Checking for [mkl_gf - mkl_gnu_thread - mkl_core - gomp - pthread - m - dl]
--   Library mkl_gf: not found
-- Checking for [mkl_gf - mkl_intel_thread - mkl_core - gomp - pthread - m - dl]
--   Library mkl_gf: not found
-- Checking for [mkl_intel_lp64 - mkl_gnu_thread - mkl_core - gomp - pthread - m - dl]
--   Library mkl_intel_lp64: not found
-- Checking for [mkl_intel_lp64 - mkl_intel_thread - mkl_core - gomp - pthread - m - dl]
--   Library mkl_intel_lp64: not found
-- Checking for [mkl_intel - mkl_gnu_thread - mkl_core - gomp - pthread - m - dl]
--   Library mkl_intel: not found
-- Checking for [mkl_intel - mkl_intel_thread - mkl_core - gomp - pthread - m - dl]
--   Library mkl_intel: not found
-- Checking for [mkl_gf_lp64 - mkl_gnu_thread - mkl_core - iomp5 - pthread - m - dl]
--   Library mkl_gf_lp64: not found
-- Checking for [mkl_gf_lp64 - mkl_intel_thread - mkl_core - iomp5 - pthread - m - dl]
--   Library mkl_gf_lp64: not found
-- Checking for [mkl_gf - mkl_gnu_thread - mkl_core - iomp5 - pthread - m - dl]
--   Library mkl_gf: not found
-- Checking for [mkl_gf - mkl_intel_thread - mkl_core - iomp5 - pthread - m - dl]
--   Library mkl_gf: not found
-- Checking for [mkl_intel_lp64 - mkl_gnu_thread - mkl_core - iomp5 - pthread - m - dl]
--   Library mkl_intel_lp64: not found
-- Checking for [mkl_intel_lp64 - mkl_intel_thread - mkl_core - iomp5 - pthread - m - dl]
--   Library mkl_intel_lp64: not found
-- Checking for [mkl_intel - mkl_gnu_thread - mkl_core - iomp5 - pthread - m - dl]
--   Library mkl_intel: not found
-- Checking for [mkl_intel - mkl_intel_thread - mkl_core - iomp5 - pthread - m - dl]
--   Library mkl_intel: not found
-- Checking for [mkl_gf_lp64 - mkl_gnu_thread - mkl_core - pthread - m - dl]
--   Library mkl_gf_lp64: not found
-- Checking for [mkl_gf_lp64 - mkl_intel_thread - mkl_core - pthread - m - dl]
--   Library mkl_gf_lp64: not found
-- Checking for [mkl_gf - mkl_gnu_thread - mkl_core - pthread - m - dl]
--   Library mkl_gf: not found
-- Checking for [mkl_gf - mkl_intel_thread - mkl_core - pthread - m - dl]
--   Library mkl_gf: not found
-- Checking for [mkl_intel_lp64 - mkl_gnu_thread - mkl_core - pthread - m - dl]
--   Library mkl_intel_lp64: not found
-- Checking for [mkl_intel_lp64 - mkl_intel_thread - mkl_core - pthread - m - dl]
--   Library mkl_intel_lp64: not found
-- Checking for [mkl_intel - mkl_gnu_thread - mkl_core - pthread - m - dl]
--   Library mkl_intel: not found
-- Checking for [mkl_intel - mkl_intel_thread - mkl_core - pthread - m - dl]
--   Library mkl_intel: not found
-- Checking for [mkl_gf_lp64 - mkl_sequential - mkl_core - m - dl]
--   Library mkl_gf_lp64: not found
-- Checking for [mkl_gf - mkl_sequential - mkl_core - m - dl]
--   Library mkl_gf: not found
-- Checking for [mkl_intel_lp64 - mkl_sequential - mkl_core - m - dl]
--   Library mkl_intel_lp64: not found
-- Checking for [mkl_intel - mkl_sequential - mkl_core - m - dl]
--   Library mkl_intel: not found
-- Checking for [mkl_gf_lp64 - mkl_sequential - mkl_core - m - dl]
--   Library mkl_gf_lp64: not found
-- Checking for [mkl_gf - mkl_sequential - mkl_core - m - dl]
--   Library mkl_gf: not found
-- Checking for [mkl_intel_lp64 - mkl_sequential - mkl_core - m - dl]
--   Library mkl_intel_lp64: not found
-- Checking for [mkl_intel - mkl_sequential - mkl_core - m - dl]
--   Library mkl_intel: not found
-- Checking for [mkl_gf_lp64 - mkl_sequential - mkl_core - m - dl]
--   Library mkl_gf_lp64: not found
-- Checking for [mkl_gf - mkl_sequential - mkl_core - m - dl]
--   Library mkl_gf: not found
-- Checking for [mkl_intel_lp64 - mkl_sequential - mkl_core - m - dl]
--   Library mkl_intel_lp64: not found
-- Checking for [mkl_intel - mkl_sequential - mkl_core - m - dl]
--   Library mkl_intel: not found
-- Checking for [mkl_gf_lp64 - mkl_gnu_thread - mkl_core - gomp - pthread - m - dl]
--   Library mkl_gf_lp64: not found
-- Checking for [mkl_gf_lp64 - mkl_intel_thread - mkl_core - gomp - pthread - m - dl]
--   Library mkl_gf_lp64: not found
-- Checking for [mkl_gf - mkl_gnu_thread - mkl_core - gomp - pthread - m - dl]
--   Library mkl_gf: not found
-- Checking for [mkl_gf - mkl_intel_thread - mkl_core - gomp - pthread - m - dl]
--   Library mkl_gf: not found
-- Checking for [mkl_intel_lp64 - mkl_gnu_thread - mkl_core - gomp - pthread - m - dl]
--   Library mkl_intel_lp64: not found
-- Checking for [mkl_intel_lp64 - mkl_intel_thread - mkl_core - gomp - pthread - m - dl]
--   Library mkl_intel_lp64: not found
-- Checking for [mkl_intel - mkl_gnu_thread - mkl_core - gomp - pthread - m - dl]
--   Library mkl_intel: not found
-- Checking for [mkl_intel - mkl_intel_thread - mkl_core - gomp - pthread - m - dl]
--   Library mkl_intel: not found
-- Checking for [mkl_gf_lp64 - mkl_gnu_thread - mkl_core - iomp5 - pthread - m - dl]
--   Library mkl_gf_lp64: not found
-- Checking for [mkl_gf_lp64 - mkl_intel_thread - mkl_core - iomp5 - pthread - m - dl]
--   Library mkl_gf_lp64: not found
-- Checking for [mkl_gf - mkl_gnu_thread - mkl_core - iomp5 - pthread - m - dl]
--   Library mkl_gf: not found
-- Checking for [mkl_gf - mkl_intel_thread - mkl_core - iomp5 - pthread - m - dl]
--   Library mkl_gf: not found
-- Checking for [mkl_intel_lp64 - mkl_gnu_thread - mkl_core - iomp5 - pthread - m - dl]
--   Library mkl_intel_lp64: not found
-- Checking for [mkl_intel_lp64 - mkl_intel_thread - mkl_core - iomp5 - pthread - m - dl]
--   Library mkl_intel_lp64: not found
-- Checking for [mkl_intel - mkl_gnu_thread - mkl_core - iomp5 - pthread - m - dl]
--   Library mkl_intel: not found
-- Checking for [mkl_intel - mkl_intel_thread - mkl_core - iomp5 - pthread - m - dl]
--   Library mkl_intel: not found
-- Checking for [mkl_gf_lp64 - mkl_gnu_thread - mkl_core - pthread - m - dl]
--   Library mkl_gf_lp64: not found
-- Checking for [mkl_gf_lp64 - mkl_intel_thread - mkl_core - pthread - m - dl]
--   Library mkl_gf_lp64: not found
-- Checking for [mkl_gf - mkl_gnu_thread - mkl_core - pthread - m - dl]
--   Library mkl_gf: not found
-- Checking for [mkl_gf - mkl_intel_thread - mkl_core - pthread - m - dl]
--   Library mkl_gf: not found
-- Checking for [mkl_intel_lp64 - mkl_gnu_thread - mkl_core - pthread - m - dl]
--   Library mkl_intel_lp64: not found
-- Checking for [mkl_intel_lp64 - mkl_intel_thread - mkl_core - pthread - m - dl]
--   Library mkl_intel_lp64: not found
-- Checking for [mkl_intel - mkl_gnu_thread - mkl_core - pthread - m - dl]
--   Library mkl_intel: not found
-- Checking for [mkl_intel - mkl_intel_thread - mkl_core - pthread - m - dl]
--   Library mkl_intel: not found
-- Checking for [mkl - guide - pthread - m]
--   Library mkl: not found
-- MKL library not found
-- Checking for [openblas]
--   Library openblas: /usr/lib/x86_64-linux-gnu/libopenblas.so
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Performing Test BLAS_F2C_DOUBLE_WORKS
-- Performing Test BLAS_F2C_DOUBLE_WORKS - Failed
-- Performing Test BLAS_F2C_FLOAT_WORKS
-- Performing Test BLAS_F2C_FLOAT_WORKS - Success
-- Performing Test BLAS_USE_CBLAS_DOT
-- Performing Test BLAS_USE_CBLAS_DOT - Success
-- Found a library with BLAS API (open).
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found a library with LAPACK API. (open)
-- Looking for clock_gettime in rt
-- Looking for clock_gettime in rt - found
-- Looking for mmap
-- Looking for mmap - found
-- Looking for shm_open
-- Looking for shm_open - found
-- Looking for shm_unlink
-- Looking for shm_unlink - found
-- Looking for malloc_usable_size
-- Looking for malloc_usable_size - found
-- Performing Test C_HAS_THREAD
-- Performing Test C_HAS_THREAD - Success
CMake Deprecation Warning at lib/luaT/CMakeLists.txt:3 (CMAKE_POLICY):
  The OLD behavior for policy CMP0026 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.

-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/luarocks_torch-scm-1-bTKYJG/torch7/build
Scanning dependencies of target TH
[  2%] Building C object lib/TH/CMakeFiles/TH.dir/THGeneral.c.o
[  5%] Building C object lib/TH/CMakeFiles/TH.dir/THHalf.c.o
[  7%] Building C object lib/TH/CMakeFiles/TH.dir/THAllocator.c.o
[ 10%] Building C object lib/TH/CMakeFiles/TH.dir/THSize.c.o
[ 12%] Building C object lib/TH/CMakeFiles/TH.dir/THStorage.c.o
[ 15%] Building C object lib/TH/CMakeFiles/TH.dir/THTensor.c.o
[ 17%] Building C object lib/TH/CMakeFiles/TH.dir/THBlas.c.o
[ 20%] Building C object lib/TH/CMakeFiles/TH.dir/THLapack.c.o
[ 23%] Building C object lib/TH/CMakeFiles/TH.dir/THLogAdd.c.o
[ 25%] Building C object lib/TH/CMakeFiles/TH.dir/THRandom.c.o
[ 28%] Building C object lib/TH/CMakeFiles/TH.dir/THFile.c.o
[ 30%] Building C object lib/TH/CMakeFiles/TH.dir/THDiskFile.c.o
[ 33%] Building C object lib/TH/CMakeFiles/TH.dir/THMemoryFile.c.o
[ 35%] Building C object lib/TH/CMakeFiles/TH.dir/THAtomic.c.o
[ 38%] Building C object lib/TH/CMakeFiles/TH.dir/THVector.c.o
[ 41%] Building C object lib/TH/CMakeFiles/TH.dir/generic/simd/convolve.c.o
[ 43%] Building C object lib/TH/CMakeFiles/TH.dir/generic/simd/convolve5x5_sse.c.o
[ 46%] Building C object lib/TH/CMakeFiles/TH.dir/vector/AVX.c.o
[ 48%] Building C object lib/TH/CMakeFiles/TH.dir/generic/simd/convolve5x5_avx.c.o
[ 51%] Building C object lib/TH/CMakeFiles/TH.dir/vector/AVX2.c.o
[ 53%] Linking C shared library libTH.so
[ 53%] Built target TH
Scanning dependencies of target luaT
[ 56%] Building C object lib/luaT/CMakeFiles/luaT.dir/luaT.c.o
[ 58%] Linking C shared library libluaT.so
/usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/liblua5.2.a(lstate.o): relocation R_X86_64_PC32 against symbol `lua_newstate' can not be used when making a shared object; перекомпилируйте с параметром -fPIC
/usr/bin/ld: final link failed: Некорректное значение
collect2: error: ld returned 1 exit status
lib/luaT/CMakeFiles/luaT.dir/build.make:94: recipe for target 'lib/luaT/libluaT.so.0' failed
make[2]: *** [lib/luaT/libluaT.so.0] Error 1
CMakeFiles/Makefile2:199: recipe for target 'lib/luaT/CMakeFiles/luaT.dir/all' failed
make[1]: *** [lib/luaT/CMakeFiles/luaT.dir/all] Error 2
Makefile:129: recipe for target 'all' failed
make: *** [all] Error 2

Error: Build error: Failed building.
tastyminerals commented 5 years ago

I don't think this is Torch related, see relevant stackoverflow issue.

tastyminerals commented 5 years ago

Why are you running torch-scm-1.rockspec with luarocks and even using sudo? Torch comes with its own version of luarocks: torch/install/bin/luarocks. You cannot use local luarocks to install Torch. Please read the official installation guidelines.

v1993 commented 5 years ago

This issue has been fixed by itself…

BTW, I've using torcho with usual luarocks for a long time without luarocks-related problems.

tastyminerals commented 5 years ago

Then you probably have not installed some of the torch dependencies that are only available via torch/install/bin/luarocks version. For example, rnn, dpnn, cunn packages. And you might have only one Lua version on the system. Try messing a little with luarocks and you'll be in trouble. There is a reason why Torch lives in a separate dir :)