Closed frederic-mahe closed 7 years ago
The fasta file of cluster representatives (-w) is not correct when using the -a option to append abundance values to amplicons missing one.
-w
-a
OUTPUT=$(mktemp) printf ">s1\nT\n" | swarm -a 1 -w "${OUTPUT}" &> /dev/null cat "${OUTPUT}" rm "${OUTPUT}"
The identifier of the amplicon (s1) is missing, and only the abundance value is reported:
s1
>_1 t
Fixed.
The fasta file of cluster representatives (
-w
) is not correct when using the-a
option to append abundance values to amplicons missing one.The identifier of the amplicon (
s1
) is missing, and only the abundance value is reported: