Closed frederic-mahe closed 5 years ago
The segfault appeared when there were just 1 or 2 sequences in the input. It was due to insufficient size of the bitmap in one of the bloom filters. Fixed in commit a5c7a21896ca6d685e0893ab30988ba327bbe292.
The issue is fixed.
Some unit tests still fail, I'll investigate and open new issues if need be.
Many unit tests fail when using a binary compiled with the latest code of that branch:
the problem could be limited to short sequences, as I did not observe any issue when feeding swarm with massive amounts of sequences with lengths ranging from 32 to 1,000 nucleotides.
Here is a simple test:
that yields a segmentation fault. Here's GDB's log: