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torognes / swarm

A robust and fast clustering method for amplicon-based studies
GNU Affero General Public License v3.0
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Sort seeds by total mass before output #133

Closed torognes closed 5 years ago

torognes commented 5 years ago

When seeds are written (specified by the -woption) to a file, they should be sorted by the total mass of the swarm. If the mass is equal, they should be sorted by the label of the seed.

Remember to add this information to the manual.

torognes commented 5 years ago

Code implemented in commit 817778a836e2224ad3e96c825663b41c5471fc8a for swarm3.

torognes commented 5 years ago

A note about the output order has been added to the manual in commit f64e4c22dfc6d629c4d9d1efc36904b33b638b98.

frederic-mahe commented 4 years ago

OK, this is now covered by tests (see https://github.com/frederic-mahe/swarm-tests/commit/e17aac703910bd6379b12215c9b40930874d7ff1)

frederic-mahe commented 1 year ago

Tests to check seed sorting rules when d > 1 were missing. This has been fixed (see https://github.com/frederic-mahe/swarm-tests/commit/fe1b31f2a4df70fd4c7486230eb7aae9da0562f1)