Closed frederic-mahe closed 7 years ago
Like vsearch, swarm would benefit from a broader support of pipes and stdin/stdout redirections. As of now:
# unlikely example swarm --output - input.fas > output.swarms
produces an empty output.swarms and write OTUs to a file named -.
output.swarms
-
Perfect, swarm 2.1.13 can now read from process substitutions, which allows for more flexible pipelines.
swarm <(printf ">s_1\nAAAA\n")
Like vsearch, swarm would benefit from a broader support of pipes and stdin/stdout redirections. As of now:
produces an empty
output.swarms
and write OTUs to a file named-
.