Closed a1an77 closed 7 years ago
Hi @a1an77
swarm normally outputs sequence identifiers for the cluster representatives. Maybe there is a problem with your identifiers? could you please paste some of the identifiers you use?
Thanks,
I am going to assume this was a problem with @a1an77 's data. I am closing that issue.
I noticed the output of the --seeds option does not output any sequence identifier for the cluster representatives. It would be very useful to have such and identifier for backtracking purposes and to couple the sequence back to the "cluster representative" identifier.
example output:
Desired ouput:
In the meantime I assume the only way to get the identifier is to rely on the fact that the seeds file has exactly the same order of the cluster file (main output) and the two can be read pairwise one record after the other. Is the assumption correct?