Internal error in align function when using a custom substitution matrix

torognes / swipe

Smith-Waterman database searches with inter-sequence SIMD parallelisation

GNU Affero General Public License v3.0

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Internal error in align function when using a custom substitution matrix #22

Closed torognes closed 10 years ago

torognes commented 10 years ago

See email dated 21 May 2014

torognes commented 10 years ago

This issue seems to be due to the use of non-symmetric matrices. SWIPE currently assumes score matrices are symmetric. If not, results may be inconsistent and SWIPE may stop with a fatal error during computation of sequence alignments. A solution is in the works.

torognes commented 10 years ago

Fixed in SWIPE 2.0.10