torognes / swipe

Smith-Waterman database searches with inter-sequence SIMD parallelisation
GNU Affero General Public License v3.0
58 stars 21 forks source link

Dual affine gap penalties #23

Open torognes opened 10 years ago

torognes commented 10 years ago

Implement a gap scoring function similar to a affine gap penalty function, but where the gap extension penalty changes to a another (lower) value when the length of the gap reaches a certain length.

Suggested in an email dated 23 May 2014.