SWIPE is great but I am running into to issues when aligning sequences that have many hits with the same alignment score. I want all these to appear in the output. I could just increase --num_alignments and --num_descriptions but this is not a good solution as the output file balloons.
It would be great if an option existed that would only print out all the highest scoring descriptions and/or alignments.
SWIPE is great but I am running into to issues when aligning sequences that have many hits with the same alignment score. I want all these to appear in the output. I could just increase
--num_alignmentsand--num_descriptionsbut this is not a good solution as the output file balloons.It would be great if an option existed that would only print out all the highest scoring descriptions and/or alignments.
Thanks, Kristian